Video Tutorial: Genome-Wide SNP Association Tutorial

Updated: September 26, 2011  |  Runtime: 9 Minutes

Level: Fundamentals

The following short video tutorial covers an abbreviated SNP analysis workflow on a whole-genome scale in SVS7 including how to apply a marker map and choose which fields are visible, how to use a script to count the number of cases and controls, how to put data in genomic order, how to merge phenotype and genotype spreadsheets, how to indicate a dependent variable, how to conduct a chi-squared test, how to find the most significant SNPs, how to navigate the genome browser, and how to create a Manhattan plot. Click below to begin video: