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" 'Where is the missing heritability?' is a question asked frequently in genetic research. The difficulty seems to come down to the common disease/common variant hypothesis not holding up." » Read more
TABLE OF CONTENTS
Tutorial: SNP Analysis
Updated: November 2009
Level: Beginner
Modules: HelixTree, WGA, Regression
The following tutorial is designed to systematically introduce you to a few of the new features and enhancements in SVS 7, particularly focusing on SNP association. It is not meant to replicate all the workflows you might use in a complete analysis, but instead touch on a sampling of the more typical scenarios you may come across in your own studies.
Requirements
To follow along you will need to download and unzip the following files:
| Download | Files | Size | Type | Description |
 |
HM_Sim_Pheno.zip | 500 KB | Data | Simulated phenotype and clinical data |
|
HM_500K_Geno.zip | 11 MB | Data | Actual genoptyes for all 270 HapMap samples using the Affy 500K Array |
We hope you enjoy the experience and look forward to your feedback.
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