1. There are two HWE columns in PBAT. The "main" HWE column is for patients only and the other for parents only. HelixTree calculates HWE for all samples (not including deactivated rows.)
2. PBAT uses 2 degrees of freedom and HelixTree only one for its HWE calculations.
Hardy Weinberg Equilibrium (HWE) differences between HelixTree and PBAT
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