http://www.goldenhelix.com/kb en-us http://www.goldenhelix.com/kb ActiveKB NX jlforsythe@goldenhelix.com Fri, 03 Sep 2010 02:49:17 MDT 20 http://www.goldenhelix.com/kb/questions/80/ http://www.goldenhelix.com/kb/questions/80/ You should not need to log in as root every time you start SVS. If you do, then you need to move the AppData shortcut and change the permissions on that folder.If the program was installed as root ... Josh Forsythe Tue, 08 Jun 2010 15:43:28 GMT http://www.goldenhelix.com/kb/questions/79/ http://www.goldenhelix.com/kb/questions/79/ Q: I’ve installed SVS under an Administrative log-in and now I can’t update the software under my User log-in. When the Administrator tried to update, it asked for a license key. How can I update ... Josh Forsythe Wed, 07 Apr 2010 18:30:45 GMT http://www.goldenhelix.com/kb/questions/78/ http://www.goldenhelix.com/kb/questions/78/ Q: I am trying to create bed/bim/fam [or PED/TPED] from a spreadsheet that has subject ID as row label, affection (1 or 2), sex (1 or 2), and has genotype data. The dropdowns have the correct colu ... Josh Forsythe Wed, 07 Apr 2010 18:29:01 GMT http://www.goldenhelix.com/kb/questions/77/ http://www.goldenhelix.com/kb/questions/77/ Q: How do I perform haplotype association tests if I have a quantitative dependent variable? Similarly, how do I perform haplotype trend regression in SVS 7? A: SVS 7 makes performing haplotype ... Josh Forsythe Wed, 07 Apr 2010 18:25:30 GMT http://www.goldenhelix.com/kb/questions/76/ http://www.goldenhelix.com/kb/questions/76/ SVS 7 requires that predictors in a regression model be numeric, not genotypic (A_A, etc.). In order to perform regression analysis on genotypes, they must first be re-coded as numeric values ba ... Josh Forsythe Wed, 07 Apr 2010 18:16:19 GMT http://www.goldenhelix.com/kb/questions/75/ http://www.goldenhelix.com/kb/questions/75/ If you suspect a crash is caused by running out of memory (RAM), please check the cache size allotted to SVS. To do this, from the SVS welcome screen (before a project is open) go to Tools > Gl ... Josh Forsythe Wed, 07 Apr 2010 18:07:44 GMT http://www.goldenhelix.com/kb/questions/64/ http://www.goldenhelix.com/kb/questions/64/ http://www.goldenhelix.com/SNP_Variation/tutorials/cnv/introduction.html Josh Forsythe Fri, 13 Mar 2009 20:58:03 GMT http://www.goldenhelix.com/kb/questions/74/ http://www.goldenhelix.com/kb/questions/74/ As of SVS version 6.3, Golden Helix PBAT includes an option when doing family-based SNP analysis to use a new Alternative Rapid Extended Pedigree Algorithm (available under the Phenotype and Haplo ... Josh Forsythe Tue, 01 Jul 2008 02:29:27 GMT http://www.goldenhelix.com/kb/questions/73/ http://www.goldenhelix.com/kb/questions/73/ This error occurs when you're trying to process Affymetrix 5.0 and 6.0 CEL files for copy number analysis and the proper library files (with a *.cdf extension) have not been selected. The newest A ... Josh Forsythe Wed, 25 Jun 2008 20:00:19 GMT http://www.goldenhelix.com/kb/questions/72/ http://www.goldenhelix.com/kb/questions/72/ Internally we have installed the x64 version of the latest Ubuntu distribution - named 8.04. You can choose either Ubuntu for GNOME or Kubuntu for the KDE desktop environment, it does not matter ... Josh Forsythe Wed, 25 Jun 2008 19:11:53 GMT