Add-On Script

LD Pairwise Analysis Scripts

Author: Greta Peterson, Golden Helix, Inc.

This script outputs results from LD analysis, both the EM and CHM methods and both R² and D' values.

Name Script Documentation
LD Pairwise Analysis Download Documentation
LD Pairwise Analysis within Gene Regions Download Documentation
LD Pairwise Analysis Matrix Output Download Documentation
LD Adjacent Pairs Analysis Download Documentation
Zip file of all LD Analysis Scripts Download All

Recommended Directory Location

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Analysis

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Analysis menu.

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