LD Pairwise Analysis Scripts
Author: Greta Peterson, Golden Helix, Inc.
This script outputs results from LD analysis, both the EM and CHM methods and both R² and D' values.
| Name | Script | Documentation |
|---|---|---|
| LD Pairwise Analysis |
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| LD Pairwise Analysis within Gene Regions |
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| LD Pairwise Analysis Matrix Output |
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| LD Adjacent Pairs Analysis |
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| Zip file of all LD Analysis Scripts |
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Download All |
Recommended Directory Location
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Analysis
Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Analysis menu.
Need a Custom Script?
Need a script and don't feel you have the bioinformatics expertise to write it yourself? Click the link below to request a custom script and we'll see what we can do to help.
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What is Python?
Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.