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Category » Haplotypes
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Why are haplotype frequencies from PBAT different than those from Haploview and Phase2?
PBAT computes haplotype frequencies differently than Haploview and Phase2. Based on the observed offspring haplotypes, a possible set of parental haplotypes are constructed. Only those parental haplotypes that are consistent with the offspring haplotypes are retained. For example, if the offspri ...