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14 Linkage Disequilibrium View
Chapter 14
Linkage Disequilibrium View
14.1 Linkage Disequilibrium Overview
14.2 Plotting Linkage Disequilibrium
14.2.1 Stop Calculation/Stop Refresh and Resume Calculation/Resume Refresh
14.2.2 Copy to Clipboard
14.2.3 Plot Visual: Color or Black and White
14.2.4 Fill Mode
14.2.5 Zoom Mode
14.2.6 Click on Graph
14.2.7 Modify Color Scaling
14.3 The File Menu
14.3.1 Create Bitmap
14.3.2 Print Image
14.3.3 Summarize Data for All Points to CSV File
14.3.4 Output Genotypes for Current Point to CSV File
14.3.5 Output Genotype Combinations for Current Point
14.3.6 Output Allele Counts for Current Point
14.3.7 Output Allele Combinations for Current Point
14.3.8 View Carlson-Method SNP Tags
14.4 LD Computation
14.4.1 LD Computation for D prime
14.4.2 LD Computation for Quick Mode
14.2 Plotting Linkage Disequilibrium
14.2.1 Stop Calculation/Stop Refresh and Resume Calculation/Resume Refresh
14.2.2 Copy to Clipboard
14.2.3 Plot Visual: Color or Black and White
14.2.4 Fill Mode
14.2.5 Zoom Mode
14.2.6 Click on Graph
14.2.7 Modify Color Scaling
14.3 The File Menu
14.3.1 Create Bitmap
14.3.2 Print Image
14.3.3 Summarize Data for All Points to CSV File
14.3.4 Output Genotypes for Current Point to CSV File
14.3.5 Output Genotype Combinations for Current Point
14.3.6 Output Allele Counts for Current Point
14.3.7 Output Allele Combinations for Current Point
14.3.8 View Carlson-Method SNP Tags
14.4 LD Computation
14.4.1 LD Computation for D prime
14.4.2 LD Computation for Quick Mode