Affymetrix Support

HelixTree and CNAM are Affymetrix GeneChip-compatible™ applications with support for directly importing Affymetrix GeneChip Human Mapping Arrays (10K, 100K, 500K, 5.0, 6.0) and associated library and annotation (marker map) files for SNP and copy number analysis.
The following links provide tips and commonly needed files that help make the integration with Affymetrix as seamless as possible:
View Webcast
SNP, ROH and CNV Association Analysis Overview with
Affymetrix SNP Arrays 5.0 and 6.0