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Example Data and Projects
The following datasets are based off the 270 HapMap samples with simulated phenotype and clinical information for each sample. Genotypes and normalized log2 ratios were generated from Affymetrix's 500K Human Mapping Array. It is useful for demonstrating a variety of whole genome association workflows including data manipulation, quality assurance, association testing, and visualization of results.
HapMap 270 Affymetrix 500K
| File | Size | File Type | Description |
|---|---|---|---|
| HM_Sim_Pheno.zip | 11KB | Data | Simulated phenotype and clinical data. |
| HM_500K_Geno.zip | 21MB | Data | Actual genotypes for all 270 HapMap samples from the Affymetrix 500K array. |
| Simulated_HapMap_GWAS.zip | 98MB | Project | This project contains all the datasets and results from the SNP Whole Genome Association Analysis tutorial. |
| HM_Sample_CNV_Data.zip | 500MB | Data | This zip file contains:
|
| HM_CNAM_22_Results.zip | 283KB | Data | Results from running CNAM optimal segmenting on PCA corrected log ratios from chromosome 22 of HapMap samples on Affymetrix 500K array. |
| ROH_Tutorial.zip | 245MB | Project | This project contains HapMap genotypes and B-allele frequencies used for the Runs of Homozygosity Tutorial. |
