Add-On Script

Nonparametric Association Tests (Binary Dependent)

Author: Autumn Laughbaum, Golden Helix, Inc.

Nonparametric Association Tests (Binary Dependent)
This function makes use of the scipy package, specifically the scipy.stats.ranksums and scipy.stats.mannwhitneyu functions. With one binary dependent column, the user can perform nonparametric association tests on all numeric columns.

Nonparametric Association Tests (Binary Dependent).py

Download Documentation Documentation

Recommended Directory Location

Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\Analysis

Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet Analysis menu.

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What is Python?

Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.

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