Add Annotation Data to Marker Map From Spreadsheet
Author: Sam Gardner, Greta Peterson, Golden Helix, Inc.
This function takes the marker map applied to the current spreadsheet and adds specified annotation data from overlapping interval(s) to each marker in the marker map. It then saves a copy of the new map with the additional information in the users Marker Map Folder as well as applies the new map to the current spreadsheet.
Add Annotation Data to Marker Map From Spreadsheet.py
Recommended Directory Location
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\File
Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet File menu.
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What is Python?
Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.