BEAGLE/BEAGLECALL Scripts Package
Author: Various GHI Staff
These scripts are for importing and exporting files from the BEAGLE and BEAGLECALL Genetic Analysis Software Packages.
| Name | Script | Documentation |
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| Import BEAGLE Files |
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| Import BEAGLE Allelic R2 Files |
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| Import BEAGLE gprobs Files as Allelic Dosage |
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| Export BEAGLE Marker File by Chromosome |
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| Export BEAGLE by Chromosome |
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| Export BEAGLECALL Genotype Probabilities |
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| Export BEAGLE CALL Allele Signals |
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| Zip File of all BEAGLE/BEAGLECALL Scripts |
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Download All |
Recommended Directory Locations
Import Scripts
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\SVS\Import
Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the project navigator Import menu.
Export Scripts
Save the script to the following directory:
*..\Application Data\Golden Helix SVS\UserScripts\Spreadsheet\File
Note: The Application Data folder is a hidden folder on many operating systems and its location varies between operating systems. The easiest way to locate this directory on your computer is to open SVS and go to Tools >Open Folder > UserScripts Folder. If saved to the proper folder, this script will be accessible from the Spreadsheet File menu.
Need a Custom Script?
Need a script and don't feel you have the bioinformatics expertise to write it yourself? Click the link below to request a custom script and we'll see what we can do to help.
Request Custom Script »
What is Python?
Python is a clear and powerful object-oriented programming language, comparable to Perl, Ruby, Scheme, or Java. Integrating Python into SVS provides full programmatic access to many of the software's features enabling the augmentation of existing tools, creating entirely new ones, automation of work flows, integration with other programs and more.