Features
With VSReports, you can easily convert the output of your tertiary analysis into a customized clinical report. After you've filtered down your imported variants, simply select variants to include in the report. You are then one click away from a report that includes:
- Identifiers from dbSNP or ICGC somatic mutation catalogs
- Descriptions of gene function from OMIM
- Pathogenicity based on your past variant assessments or Clinvar
- HGVS variant names
- Exon Numbers
- Sequence Ontology
- Coverage Information
- Variant interpretations provided by the user
- Overall Test interpretation
Full Integration of OMIM
VSReports comes with OMIM, a comprehensive catalog focusing on the relationship between the phenotype and genotype of all known Mendelian disorders and over 15,000 genes. The OMIM annotation source will be deeply integrated into VSReports, and carefully curated at the phenotype, gene and variant level.
Customizable Report Templates
Reports can be branded and styled to match the documents that your lab typically produces. With tight integration to your analysis results, you can also pull in additional annotation sources relevant to the sample being tested. we are happy to work with you to design templates specific to your needs.
Modeled off ACMG Guidelines
VSReports ships with report templates that are modeled off of the ACMG guidelines. Templates for both hereditary and cancer analysis are included free of charge.
Customizable Export Formats
Reports are created as HTML documents which can be exported to a PDF with a single click. Export formats are completely customizable and can be tailored to integrate with other services that use formats like XML as their input.
The following descriptive and filterable data points will be joinable to your imported variants:
- Functional description of genes and phenotypes ready for physicians to orient themselves
- Lists of phenotypes linked to genes with supporting evidence and modes of inheritance of the phenotype (autosomal dominant, etc.)
- Paper references with relevant PubMed and direct URL Links to clinical relevant genetic resources such as testing guidelines, ontology and gene test registries
- Descriptive interpretations for variants curated from published papers with family and disease context
Use Cases
Reporting on Gene Panels
VSReports has the ability to generate clinical-grade reports...
VSReports are fully customizable, containing focused and actionable data. It is easy to differentiate primary findings from secondary findings. VS Reports ships with report templates that are modeled off of the ACMG guidelines, the de-facto gold standard for clinical reporting. There are templates available for a gene panel report and a more complex trio analysis. Our reports can be used for both hereditary and cancer analysis and are included free of charge.
Reporting on Clinical Exomes & Trios
Reports can be branded and styled to match the documents that your lab typically produces...
With tight integration to your analysis results, access to OMIM is bundled with this software. However, you can pull in additional annotation sources relevant to the sample tested leveraging our powerful and flexible data import capabilities. By default, reports are created as HTML documents which can be exported to a PDF with a single click. Export formats are completely customizable and can be tailored to integrate with other services that use formats such as XML as their input.
Case Studies
We know our software will exceed your expectations. But don't just take it from us, see how our customers have benefitted from it.
Dr. Benjamin Darbro
Director, Shivanand R. Patil Cytogenetics and Molecular Laboratory
VarSeq had everything we were looking for with regards to annotation, filtering sources and an actual visual browser within the software itself. VSReports allows us to take it all the way to the report generation. But what really set it apart in retrospect is how intuitive it is.Read Dr. Darbro's Entire Case Study
Dr. Laura Li
Associate Director, Children's Hospital Los Angeles
VarSeq is pretty user-friendly. Also the support team is very helpful. They know the VarSeq software in and out and the tech support has helped me to quickly learn VarSeq.Read Dr. Li's Entire Case Study
Recommended Learning Materials
We have a variety of supplemental learning materials to further educate anyone interested in the industry of our software solutions. Here are some of our recommended materials for you to check out related to VSReports!
eBooks
Check out our free eBooks on a variety of different topics:
Webcasts
Watch this webcast that gives a great overview of our clinical stack!
Other Resources
Explore a clinical workflow in VarSeq or follow along with a tutorial!
VarSeq Viewer:
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VSReports in Action
Download HereTry VSReports for Free
Did you know we offer complimentary trials of our software? No restricted features, no sample data - you get to try all the features of VSWarehouse with your data and see how it works!
If you are interested in a trial, please fill out the form below, and we will send you the details!
Technical Specifications
VarSeq is on-premises software, ensuring full control over installation and data management. It is compatible with various deployment environments including workstations, server setups with remote desktop access, and private cloud servers.
The software is optimized for operation within strict corporate firewalls. It seamlessly integrates with existing web proxy configurations, ensuring uninterrupted functionality in secured network infrastructures. VarSeq's internet connectivity requirements are minimal. It only needs to connect to a select group of Golden Helix servers. This connection is essential for license verification and accessing annotation data updates.
See System Requirements for more details of hardware and operating systems requirements based on planned workflows.